File list of package metaphlan in bianca of architecture all
/usr/bin/add_metadata_tree.py /usr/bin/extract_markers.py /usr/bin/merge_metaphlan_tables.py /usr/bin/metaphlan /usr/bin/metaphlan2krona.py /usr/bin/plot_tree_graphlan.py /usr/bin/read_fastx.py /usr/bin/run_treeshrink.py /usr/bin/sample2markers.py /usr/bin/sgb_to_gtdb_profile.py /usr/bin/strain_transmission.py /usr/bin/strainphlan /usr/bin/treeshrink.py /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/PKG-INFO /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/dependency_links.txt /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/entry_points.txt /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/requires.txt /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/top_level.txt /usr/lib/python3/dist-packages/metaphlan/__init__.py /usr/lib/python3/dist-packages/metaphlan/metaphlan.py /usr/lib/python3/dist-packages/metaphlan/metaphlan_databases/README.txt /usr/lib/python3/dist-packages/metaphlan/strainphlan.py /usr/lib/python3/dist-packages/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv /usr/lib/python3/dist-packages/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv /usr/lib/python3/dist-packages/metaphlan/utils/__init__.py /usr/lib/python3/dist-packages/metaphlan/utils/add_metadata_tree.py /usr/lib/python3/dist-packages/metaphlan/utils/calculate_diversity.R /usr/lib/python3/dist-packages/metaphlan/utils/consensus_markers.py /usr/lib/python3/dist-packages/metaphlan/utils/database_controller.py /usr/lib/python3/dist-packages/metaphlan/utils/external_exec.py /usr/lib/python3/dist-packages/metaphlan/utils/extract_markers.py /usr/lib/python3/dist-packages/metaphlan/utils/merge_metaphlan_tables.py /usr/lib/python3/dist-packages/metaphlan/utils/metaphlan2krona.py /usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk /usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv /usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 /usr/lib/python3/dist-packages/metaphlan/utils/parallelisation.py /usr/lib/python3/dist-packages/metaphlan/utils/phylophlan_controller.py /usr/lib/python3/dist-packages/metaphlan/utils/plot_bug.py /usr/lib/python3/dist-packages/metaphlan/utils/plot_tree_graphlan.py /usr/lib/python3/dist-packages/metaphlan/utils/pyphlan.py /usr/lib/python3/dist-packages/metaphlan/utils/read_fastx.py /usr/lib/python3/dist-packages/metaphlan/utils/sample2markers.py /usr/lib/python3/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py /usr/lib/python3/dist-packages/metaphlan/utils/strain_transmission.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_d.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/CITATION /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/INDEX /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/treeshrink.py /usr/lib/python3/dist-packages/metaphlan/utils/util_fun.py /usr/share/doc/metaphlan/README.html /usr/share/doc/metaphlan/changelog.Debian.gz /usr/share/doc/metaphlan/changelog.gz /usr/share/doc/metaphlan/copyright /usr/share/doc/metaphlan/images/1574126761-RAxML_bestTree.s__Bacteroides_caccae.tree.metadata.png /usr/share/doc/metaphlan/images/1771497600-snp_distance.png /usr/share/doc/metaphlan/images/476974413-tree_alignment.png /usr/share/doc/metaphlan/images/get-pngs /usr/share/lintian/overrides/metaphlan /usr/share/man/man1/metaphlan.1.gz /usr/share/man/man1/strainphlan.1.gz