eLxr packages [ bianca ]
[ Quellcode: bowtie2 ]
Paket: bowtie2 (2.5.4-1 und andere)
Links für bowtie2
Quellcode-Paket bowtie2 herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [bowtie-bio.sourceforge.net]
Ähnliche Pakete:
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
Andere Pakete mit Bezug zu bowtie2
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC support library
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- sug: bowtie2-examples
- Examples for bowtie2
bowtie2 herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| amd64 | 2.5.4-1+b2 | 1.469,7 kB | 5.941,0 kB | [Liste der Dateien] |