Paket: concavity (0.1+dfsg.1-6)

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Quellcode-Paket concavity herunterladen:

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Externe Ressourcen:

Homepage [compbio.cs.princeton.edu]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

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dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 5)

GNU Standard C++ Library v3

sug: conservation-code

protein sequence conservation scoring tool
sug: pymol

Molecular Graphics System

concavity herunterladen

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