Paket: tree-ppuzzle (5.3~rc16+dfsg-12 und andere)

Links für tree-ppuzzle

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Quellcode-Paket tree-puzzle herunterladen:

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Externe Ressourcen:

Homepage [www.tree-puzzle.de]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

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dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libopenmpi40 (>= 5.0.6)

high performance message passing library -- shared library
dep: libsprng2

SPRNG Scalable Parallel RNG library -- library package
dep: mpi-default-bin

Standard MPI runtime programs (metapackage)

rec: tree-puzzle-doc

Reconstruction of phylogenetic trees by maximum likelihood (doc)

sug: phylip

package of programs for inferring phylogenies
sug: treetool

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tree-ppuzzle herunterladen

Download für alle verfügbaren Architekturen
Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	5.3~rc16+dfsg-12+b1	183,4 kB	441,0 kB	[Liste der Dateien]
arm64	5.3~rc16+dfsg-12+b1	167,8 kB	429,0 kB	[Liste der Dateien]