Paquet : flye (2.9.5+dfsg-1)

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de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Autres paquets associés à flye

dépendances

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dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: minimap2

versatile pairwise aligner for genomic and spliced nucleotide sequences
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-six

Python 2 and 3 compatibility library
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	22 656,8 ko	36 930,0 ko	[liste des fichiers]