eLxr packages [ bianca ]
[ Paquet source : mash ]
Paquet : mash (2.3+dfsg-6 et autres)
Liens pour mash
Télécharger le paquet source mash :
Responsables :
Ressources externes :
- Page d'accueil [mash.readthedocs.io]
Paquets similaires :
fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.
Autres paquets associés à mash
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libcapnp-1.1.0
- Cap'n Proto C++ library
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libgsl28 (>= 2.8+dfsg)
- GNU Scientific Library (GSL) -- library package
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- dep: libmurmurhash2 (>= 0.2)
- Portable MurmurHash Implementation
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Télécharger mash
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 2.3+dfsg-6+b2 | 187,5 ko | 538,0 ko | [liste des fichiers] |