Paquet : stacks (2.68+dfsg-2)

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Page d'accueil [creskolab.uoregon.edu]

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pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Autres paquets associés à stacks

dépendances

recommandations

suggestions

enhances

dep: bsdextrautils

extra utilities from 4.4BSD-Lite
dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libdbi-perl

Perl Database Interface (DBI)
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

rec: libspreadsheet-writeexcel-perl

module to create Excel spreadsheets
rec: littler

GNU R scripting and command-line front-end -- transition package
un paquet virtuel est également fourni par r-cran-littler

sug: gdb

GNU Debugger

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