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[ Paquet source : tiddit ]
Paquet : tiddit (3.6.1+dfsg-2 et autres)
Liens pour tiddit
Télécharger le paquet source tiddit :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
Autres paquets associés à tiddit
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- dep: libc6 (>= 2.4)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.14)
- dep: python3 (>= 3.13~)
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- dep: python3-joblib
- tools to provide lightweight pipelining in Python
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- dep: python3-numpy
- Python library for numerical computations (Python 3)
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- dep: python3-numpy2-abi0
- paquet virtuel fourni par python3-numpy
- ou python3-numpy-abi9
- Paquet indisponible
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
Télécharger tiddit
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 3.6.1+dfsg-2+b1 | 322,3 ko | 1 376,0 ko | [liste des fichiers] |