eLxr packages [ bianca ]
[ Paquet source : ariba ]
Paquet : ariba (2.14.7+ds-7 et autres)
Liens pour ariba
Télécharger le paquet source ariba :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Autres paquets associés à ariba
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
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un paquet virtuel est également fourni par libc6-udeb
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- dep: libfml0 (>= 0.1)
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- dep: libgcc-s1 (>= 3.0)
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- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 13.1)
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- dep: mummer
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- dep: python3
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- dep: python3 (<< 3.14)
- dep: python3 (>= 3.13~)
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- dep: python3-biopython
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- dep: python3-pymummer
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- dep: python3-pysam
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- dep: zlib1g (>= 1:1.1.4)
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- sug: spades
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Télécharger ariba
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| arm64 | 2.14.7+ds-7+b1 | 1 906,5 ko | 20 532,0 ko | [liste des fichiers] |