Paquet : bio-tradis (1.4.5+dfsg2-2)

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Paquets similaires :

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

Autres paquets associés à bio-tradis

dépendances

recommandations

suggestions

enhances

dep: libbio-perl-perl

BioPerl core perl modules
dep: libexception-class-perl

module that allows you to declare real exception classes in Perl
dep: libmoose-perl

modern Perl object system framework
dep: libtext-csv-perl

comma-separated values manipulator (using XS or PurePerl)
dep: libtry-tiny-perl

module providing minimalistic try/catch
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-getopt

GNU R package providing command-line parsing functionality
dep: r-cran-mass

GNU R package of Venables and Ripley's MASS
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: smalt

Sequence Mapping and Alignment Tool
dep: tabix

generic indexer for TAB-delimited genome position files

rec: artemis

genome browser and annotation tool
rec: r-bioc-edger

Empirical analysis of digital gene expression data in R

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	78,5 ko	244,0 ko	[liste des fichiers]