Paquet : centrifuge (1.0.4.2-1)

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rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Autres paquets associés à centrifuge

dépendances

recommandations

suggestions

enhances

dep: hisat2

graph-based alignment of short nucleotide reads to many genomes
dep: jellyfish

count k-mers in DNA sequences
dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	568,7 ko	1 781,0 ko	[liste des fichiers]
arm64	520,8 ko	1 671,0 ko	[liste des fichiers]