eLxr packages [ bianca ]
[ Paquet source : nanopolish ]
Paquet : nanopolish (0.14.0-1 et autres)
Liens pour nanopolish
Télécharger le paquet source nanopolish :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
Autres paquets associés à nanopolish
|
|
|
|
-
- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libhdf5-310 (>= 1.14.3)
- HDF5 C runtime files - serial version
-
- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
-
- dep: libslow5-0t64 (>= 0.5.1)
- library for reading & writing SLOW5 files
-
- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
-
- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: python3-biopython
- Python3 library for bioinformatics
-
- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
Télécharger nanopolish
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 0.14.0-1+b3 | 2 149,9 ko | 9 639,0 ko | [liste des fichiers] |
| arm64 | 0.14.0-1+b4 | 2 080,4 ko | 9 475,0 ko | [liste des fichiers] |