Paquet : ragout (2.3-5 et autres)

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Page d'accueil [github.com]

Paquets similaires :

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

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dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1) [amd64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 14) [arm64]
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-networkx

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dep: python3-six

Python 2 and 3 compatibility library

rec: sibelia

comparative genomics tool

Télécharger ragout

Télécharger pour toutes les architectures proposées
Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	2.3-5	2 072,9 ko	9 659,0 ko	[liste des fichiers]
arm64	2.3-5+b2	2 068,1 ko	9 664,0 ko	[liste des fichiers]