Paquet : clonalframe (1.2-11 et autres)

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inference of bacterial microevolution using multilocus sequence data

ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.

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dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libgsl28 (>= 2.8+dfsg)

GNU Scientific Library (GSL) -- library package
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3

sug: clonalframeml

Efficient Inference of Recombination in Whole Bacterial Genomes

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Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	1.2-11+b3	51,5 ko	143,0 ko	[liste des fichiers]
arm64	1.2-11+b3	46,9 ko	151,0 ko	[liste des fichiers]