eLxr packages [ bianca ]
[ Paquet source : hinge ]
Paquet : hinge (0.5.0-7 et autres)
Liens pour hinge
Télécharger le paquet source hinge :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
long read genome assembler based on hinging
HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.
Autres paquets associés à hinge
|
|
|
|
-
- dep: daligner
- local alignment discovery between long nucleotide sequencing reads
-
- dep: dascrubber
- alignment-based scrubbing pipeline for DNA sequencing reads
-
- dep: dazzdb
- manage nucleotide sequencing read data
-
- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libfmt10 (>= 10.1.1+ds1)
- fast type-safe C++ formatting library -- library
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libgomp1 (>= 4.2.1)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-colormap
- ease manipulation of matplotlib colormaps and color codecs (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Python library for numerical computations (Python 3)
-
- dep: python3-pbcore
- Python 3 library for processing PacBio data files
-
- dep: python3-ujson
- ultra fast JSON encoder and decoder for Python 3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Télécharger hinge
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 0.5.0-7+b3 | 466,2 ko | 3 096,0 ko | [liste des fichiers] |
| arm64 | 0.5.0-7+b4 | 419,8 ko | 3 060,0 ko | [liste des fichiers] |