Paquet : yanosim (0.1-6)

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Paquets similaires :

read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model:

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.

2. yanosim quantify:

   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.

3. yanosim simulate:

   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

Autres paquets associés à yanosim

dépendances

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dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-click

Command-Line Interface Creation Kit - Python 3.x
dep: python3-numpy

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dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3

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Télécharger pour toutes les architectures proposées
Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	9,5 ko	45,0 ko	[liste des fichiers]
arm64	9,5 ko	45,0 ko	[liste des fichiers]