Package: allelecount (4.3.0-2)

Links for allelecount

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Download Source Package allelecount:

[allelecount_4.3.0-2.debian.tar.xz]
[allelecount_4.3.0-2.dsc]
[allelecount_4.3.0.orig.tar.gz]

Maintainers:

Debian Med Packaging Team
Andreas Tille

External Resources:

Homepage [github.com]

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r-other-ascat
r-cran-pscbs
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bamtools
gatb-core-testdata
gatb-core
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NGS copy number algorithms

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).

The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.

Other Packages Related to allelecount

depends

recommends

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enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libhts3 (>= 1.10)

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Architecture	Package Size	Installed Size	Files
amd64	28.3 kB	90.0 kB	[list of files]
arm64	27.5 kB	118.0 kB	[list of files]