eLxr packages [ bianca ]
[ ソース: bali-phy ]
パッケージ: bali-phy (4.0-1)
Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.
その他の bali-phy 関連パッケージ
|
|
|
|
-
- dep: libboost-chrono1.83.0t64 (>= 1.83.0)
- C++ representation of time duration, time point, and clocks
-
- dep: libboost-json1.83.0 (>= 1.83.0)
- C++ containers and algorithms that implement JSON
-
- dep: libboost-program-options1.83.0 (>= 1.83.0)
- program options library for C++
-
- dep: libboost-random1.83.0 (>= 1.83.0)
- Boost Random Number Library
-
- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libcairo2 (>= 1.4.10)
- Cairo 2D vector graphics library
-
- dep: libfmt10 (>= 10.1.1+ds1)
- fast type-safe C++ formatting library -- library
-
- dep: libgcc-s1 (>= 3.4)
- GCC support library
-
- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- rec: gnuplot
- Command-line driven interactive plotting program.
以下のパッケージによって提供される仮想パッケージでもあります: gnuplot-nox, gnuplot-qt, gnuplot-x11
-
- rec: r-base
- GNU R statistical computation and graphics system