eLxr packages [ bianca ]
[ ソース: mummer ]
パッケージ: mummer (3.23+dfsg-8)
Efficient sequence alignment of full genomes
MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.
その他の mummer 関連パッケージ
|
|
|
|
-
- dep: gawk
- GNU awk, a pattern scanning and processing language
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language