eLxr packagesパッケージ: libjellyfish-perl (2.3.1-4 など)
libjellyfish-perl に関するリンク
jellyfish ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [www.genome.umd.edu]
類似のパッケージ:
count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Perl bindings of jellyfish.
その他の libjellyfish-perl 関連パッケージ
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: perl (>= 5.40.1-2)
- Larry Wall's Practical Extraction and Report Language
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- dep: perlapi-5.40.1
- 以下のパッケージによって提供される仮想パッケージです: perl-base