eLxr packagesPakiet: python3-dna-jellyfish (2.3.1-4 i inne)
Odnośniki dla python3-dna-jellyfish
Pobieranie pakietu źródłowego jellyfish:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [www.genome.umd.edu]
Podobne pakiety:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Inne pakiety związane z python3-dna-jellyfish
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libjellyfish-2.0-2 (>= 2.3.1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.14)
- dep: python3 (>= 3.13~)
Pobieranie python3-dna-jellyfish
| Architektura | Wersja | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|---|
| amd64 | 2.3.1-4+b1 | 55,7 KiB | 186,0 KiB | [lista plików] |