Pakiet: python3-shasta (0.12.0-1 i inne)

Odnośniki dla python3-shasta

Śledzenie łatek systemu eLxr

Pobieranie pakietu źródłowego shasta:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

nanopore whole genome assembly (dynamic library)

De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Computational methods used by the Shasta assembler include:

 * Using a run-length representation of the read sequence. This makes
   the assembly process more resilient to errors in homopolymer
   repeat counts, which are the most common type of errors in Oxford
   Nanopore reads.

 * Using in some phases of the computation a representation of the read
   sequence based on markers, a fixed subset of short k-mers (k ≈ 10).

Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.

This package contains the dynamic library that can be interfaced and imported within Python.

Inne pakiety związane z python3-shasta

wymaga

poleca

sugeruje

enhances

dep: libblas3

Basic Linear Algebra Reference implementations, shared library

lub libblas.so.3

pakiet wirtualny udostępniany przez libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libboost-program-options1.83.0 (>= 1.83.0)

program options library for C++
dep: libboost-serialization1.83.0 (>= 1.83.0)

serialization library for C++
dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.4)

GCC support library
dep: liblapack3

Library of linear algebra routines 3 - shared version

lub liblapack.so.3

pakiet wirtualny udostępniany przez liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libpng16-16t64 (>= 1.6.2)

PNG library - runtime (version 1.6)
dep: libpython3.13 (>= 3.13.0~rc3)

Shared Python runtime library (version 3.13)
dep: libspoa7.0.0 (>= 4.0.5)

SIMD partial order alignment library
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3 (<< 3.14)

interactive high-level object-oriented language (default python3 version)

dep: python3 (>= 3.13~)

Pobieranie python3-shasta

Pobierz dla wszystkich dostępnych architektur
Architektura	Wersja	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	0.12.0-1+b2	2 200,2 KiB	8 206,0 KiB	[lista plików]