eLxr packagesPakiet: freecontact (1.0.21-15)
Odnośniki dla freecontact
Pobieranie pakietu źródłowego freecontact:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [rostlab.org]
Podobne pakiety:
fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the command line tool freecontact(1).
Inne pakiety związane z freecontact
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- dep: libboost-program-options1.83.0 (>= 1.83.0)
- program options library for C++
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libfreecontact0t64 (>= 1.0.21)
- fast protein contact predictor library
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: libxerces-c3.2t64
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: bash-completion
- programmable completion for the bash shell
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- sug: hhsuite
- sensitive protein sequence searching based on HMM-HMM alignment
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- sug: hmmer
- profile hidden Markov models for protein sequence analysis
Pobieranie freecontact
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 372,0 KiB | 1 786,0 KiB | [lista plików] |
| arm64 | 335,0 KiB | 1 826,0 KiB | [lista plików] |