eLxr packages [ bianca ]
[ Pakiet źródłowy: stacks ]
Pakiet: stacks (2.68+dfsg-2)
Odnośniki dla stacks
Pobieranie pakietu źródłowego stacks:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [creskolab.uoregon.edu]
Podobne pakiety:
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
Inne pakiety związane z stacks
|
|
|
|
-
- dep: bsdextrautils
- extra utilities from 4.4BSD-Lite
-
- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
-
- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
-
- rec: littler
- GNU R scripting and command-line front-end -- transition package
również pakiet wirtualny udostępniany przez r-cran-littler
-
- sug: gdb
- GNU Debugger
Pobieranie stacks
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 1 231,5 KiB | 6 161,0 KiB | [lista plików] |
| arm64 | 1 057,3 KiB | 5 829,0 KiB | [lista plików] |