eLxr packages [ bianca ]
[ Fonte: stringtie ]
Pacote: stringtie (2.2.1+ds-3 e outros)
Links para stringtie
Baixe o pacote-fonte stringtie:
- [stringtie_2.2.1+ds-3.debian.tar.xz]
- [stringtie_2.2.1+ds-3.dsc]
- [stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.2.1+ds.orig.tar.xz]
Mantenedores(as):
Fontes externas:
- Pagina principal [ccb.jhu.edu]
Pacotes similares:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Outros pacotes relacionados a stringtie
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: stringtie-examples
- Pacote não disponível
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- sug: cufflinks
- Pacote não disponível
Download de stringtie
| Arquitetura | Versão | Tamanho do pacote | Tamanho instalado | Arquivos |
|---|---|---|---|---|
| arm64 | 2.2.1+ds-3+b2 | 363.9 kB | 1,005.0 kB | [lista de arquivos] |