Pacote: discosnp (1:2.6.2-4 e outros)

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discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

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dep: gatb-core

Genome Analysis Toolbox with de-Bruijn graph
dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
dep: libgatbcore3 (>= 1.4.2) [amd64]

dynamic library of the Genome Analysis Toolbox

dep: libgatbcore3 (>= 1.4.2+dfsg) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhdf5-310 (>= 1.14.3)

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

Download de discosnp

Baixe para todas as arquiteturas disponíveis
Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	1:2.6.2-4+b2	1,423.5 kB	2,900.0 kB	[lista de arquivos]
arm64	1:2.6.2-4+b2	1,408.8 kB	3,060.0 kB	[lista de arquivos]