Pacote: ivar (1.4.4+dfsg-1)

Links para ivar

Rastreador de patch eLxr

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Pagina principal [github.com]

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functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Outros pacotes relacionados a ivar

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dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	224.7 kB	1,532.0 kB	[lista de arquivos]
arm64	205.7 kB	1,556.0 kB	[lista de arquivos]