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Pacote: parsnp (2.1.3+dfsg-1)

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rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

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Download de parsnp

Baixe para todas as arquiteturas disponíveis
Arquitetura Tamanho do pacote Tamanho instalado Arquivos
amd64 209.3 kB1,959.0 kB [lista de arquivos]
arm64 196.0 kB1,947.0 kB [lista de arquivos]