Pacote: kleborate (2.4.1-5)

Links para kleborate

Rastreador de patch eLxr

Baixe o pacote-fonte kleborate:

Mantenedores(as):

Fontes externas:

Pagina principal [github.com]

Pacotes similares:

tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

Outros pacotes relacionados a kleborate

depende

recomenda

sugere

melhora

dep: kaptive

obtain information about K and O types for Klebsiella genome assemblies
dep: kaptive-data

reference data for kaptive for Klebsiella genome assemblies
dep: mash

fast genome and metagenome distance estimation using MinHash
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-pkg-resources

Package Discovery and Resource Access using pkg_resources

Download de kleborate

Baixe para todas as arquiteturas disponíveis
Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	7,559.6 kB	62,170.0 kB	[lista de arquivos]
arm64	7,559.6 kB	62,170.0 kB	[lista de arquivos]