Пакет: ivar (1.4.4+dfsg-1)

Ссылки для ivar

Отслеживание заплат eLxr

Исходный код ivar:

Сопровождающие:

Внешние ресурсы:

Сайт [github.com]

Подобные пакеты:

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Другие пакеты, относящиеся к ivar

зависимости

рекомендации

предложения

enhances

dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

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