eLxr packages [ bianca ]
[ Источник: lumpy-sv ]
Пакет: lumpy-sv (0.3.1+dfsg-7 и другие)
Ссылки для lumpy-sv
Исходный код lumpy-sv:
Сопровождающие:
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
Другие пакеты, относящиеся к lumpy-sv
|
|
|
|
-
- dep: bamkit
- tools for common BAM file manipulations
-
- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-numpy
- Python library for numerical computations (Python 3)
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: samblaster
- marks duplicates, extracts discordant/split reads
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: sambamba
- tools for working with SAM/BAM data
Загрузка lumpy-sv
| Архитектура | Версия | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|---|
| amd64 | 0.3.1+dfsg-7+b1 | 205,3 Кб | 689,0 Кб | [список файлов] |