eLxr packages [ bianca ]
[ Источник: prime-phylo ]
Пакет: prime-phylo (1.0.11-13 и другие)
Ссылки для prime-phylo
Исходный код prime-phylo:
Сопровождающие:
Внешние ресурсы:
- Сайт [prime.sbc.su.se]
Подобные пакеты:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Другие пакеты, относящиеся к prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- или libblas.so.3
- виртуальный пакет, предоставляемый libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.83.0 (>= 1.83.0)
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.83.0 (>= 1.83.0)
- serialization library for C++
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 4.5) [arm64]
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- или liblapack.so.3
- виртуальный пакет, предоставляемый liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi40 (>= 5.0.6)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: libxml2 (>= 2.7.4)
- GNOME XML library
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
Загрузка prime-phylo
| Архитектура | Версия | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|---|
| amd64 | 1.0.11-13+b1 | 825,4 Кб | 3 160,0 Кб | [список файлов] |
| arm64 | 1.0.11-13+b1 | 727,5 Кб | 3 319,0 Кб | [список файлов] |