eLxr packagesPaket: augustus (3.5.0+dfsg-2)
Länkar för augustus
Hämta källkodspaketet augustus:
Ansvariga:
Externa resurser:
- Hemsida [bioinf.uni-greifswald.de]
Liknande paket:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Andra paket besläktade med augustus
|
|
|
|
-
- dep: augustus-data
- data files for AUGUSTUS
-
- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libcolamd2 (>= 1:4.5.2)
- column approximate minimum degree ordering library for sparse matrices
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
-
- dep: libhts3 (>= 1.10)
- Paketet inte tillgängligt
-
- dep: libmariadb3 (>= 3.0.0)
- MariaDB database client library
-
- dep: libmysql++3v5 (>= 3.2.5-1~)
- Paketet inte tillgängligt
-
- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 shared library
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- rec: samtools
- Paketet inte tillgängligt
-
- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
-
- sug: diamond-aligner
- Paketet inte tillgängligt
-
- sug: libdbd-mysql-perl
- Paketet inte tillgängligt
-
- sug: libfile-which-perl
- Perl module for searching paths for executable programs
-
- sug: libparallel-forkmanager-perl
- Paketet inte tillgängligt
-
- sug: libyaml-perl
- YAML Ain't Markup Language
-
- sug: python3-biopython
- Paketet inte tillgängligt
Hämta augustus
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 2.000,1 kbyte | 10.856,0 kbyte | [filförteckning] |