Paket: ragout (2.3-5)

Länkar för ragout

eLxr Patch Tracker

Hämta källkodspaketet ragout:

Ansvariga:

Externa resurser:

Hemsida [github.com]

Liknande paket:

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Andra paket besläktade med ragout

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-networkx

tool to create, manipulate and study complex networks (Python3)
dep: python3-six

Python 2 and 3 compatibility library

rec: sibelia

comparative genomics tool

Hämta ragout

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	2.072,9 kbyte	9.659,0 kbyte	[filförteckning]