Paket: spaln (3.0.2+dfsg-2 och andra)

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Externa resurser:

Hemsida [github.com]

Liknande paket:

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Andra paket besläktade med spaln

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.39)

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC support library
dep: libgsl28 (>= 2.8+dfsg)

GNU Scientific Library (GSL) -- library package
dep: libstdc++6 (>= 5)

GNU Standard C++ Library v3
dep: spaln-data

splicing-aware transcript-alignment to genomic DNA (data)
dep: zlib1g (>= 1:1.2.0.2)

compression library - runtime

Hämta spaln

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	3.0.2+dfsg-2+b1	567,9 kbyte	1.945,0 kbyte	[filförteckning]
arm64	3.0.2+dfsg-2+b1	510,3 kbyte	2.231,0 kbyte	[filförteckning]