Пакунок: cwltool (3.1.20250110105449-3)

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Homepage [cwltool.readthedocs.io]

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Common Workflow Language reference implementation

This is the reference implementation of the Common Workflow Language standards.

The CWL open standards are for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, Physics, and Chemistry.

The CWL reference implementation (cwltool) is intended to be feature complete and to provide comprehensive validation of CWL files as well as provide other tools related to working with CWL descriptions.

Інші пакунки пов'язані з cwltool

depends

recommends

suggests

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-arcp

(Archive and Package) URI parser and generator
dep: python3-argcomplete

bash/zsh tab completion for argparse (for Python 3)
dep: python3-coloredlogs

colored terminal output for Python 3's logging module
dep: python3-cwl-utils (>= 0.32)

Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2
dep: python3-mypy-extensions

Experimental type system extensions for mypy typechecker (Python 3)
dep: python3-prov

W3C Provenance Data Model (Python 3)
dep: python3-psutil

module providing convenience functions for managing processes (Python3)
dep: python3-pydot

Python interface to Graphviz's dot
dep: python3-pyparsing

alternative to creating and executing simple grammars - Python 3.x
dep: python3-rdflib (>> 6)

Python 3 library containing an RDF triple store and RDF parsers/serializers
dep: python3-requests

elegant and simple HTTP library for Python3, built for human beings
dep: python3-rich-argparse

Rich help formatters for argparse and optparse
dep: python3-ruamel.yaml

Roundtrip YAML parser/emitter (Python 3 module)
dep: python3-schema-salad (>= 8.4.20230808163024)

Schema Annotations for Linked Avro Data (SALAD)
dep: python3-spython

Command line Python tool for working with Singularity

rec: nodejs

evented I/O for V8 javascript - runtime executable

sug: cwltool-doc

Common Workflow Language reference implementation -- docs
sug: podman

tool to manage containers and pods

or docker.io

Linux container runtime

or singularity-container

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