eLxr packages [ bianca ]
[ 源代码： pizzly ]
软件包：pizzly（0.37.3+ds-9）
Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
其他与 pizzly 有关的软件包
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- dep: kallisto
- near-optimal RNA-Seq quantification
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 12)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: python3-h5py
- general-purpose Python interface to hdf5