eLxr packages [ bianca ]
[ 源代码： picard-tools ]
软件包：picard-tools（3.3.0+dfsg-2）
picard-tools 的相关链接
下载源码包 picard-tools：
- [picard-tools_3.3.0+dfsg-2.debian.tar.xz]
- [picard-tools_3.3.0+dfsg-2.dsc]
- [picard-tools_3.3.0+dfsg.orig.tar.xz]
维护小组：
- Debian Med Packaging Team
- Charles Plessy
- Olivier Sallou
- Vincent Danjean
- Andreas Tille
- Steffen Moeller
- Pierre Gruet
外部的资源：
- 主页 [broadinstitute.github.io]
相似软件包：
Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Picard Tools includes these utilities to manipulate SAM and BAM files:
AddCommentsToBam FifoBuffer
AddOrReplaceReadGroups FilterSamReads
BaitDesigner FilterVcf
BamIndexStats FixMateInformation
GatherBamFiles
BedToIntervalList GatherVcfs
BuildBamIndex GenotypeConcordance
CalculateHsMetrics IlluminaBasecallsToFastq
CalculateReadGroupChecksum IlluminaBasecallsToSam
CheckIlluminaDirectory LiftOverIntervalList
CheckTerminatorBlock LiftoverVcf
CleanSam MakeSitesOnlyVcf
CollectAlignmentSummaryMetrics MarkDuplicates
CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar
CollectGcBiasMetrics MarkIlluminaAdapters
CollectHiSeqXPfFailMetrics MeanQualityByCycle
CollectIlluminaBasecallingMetrics MergeBamAlignment
CollectIlluminaLaneMetrics MergeSamFiles
CollectInsertSizeMetrics MergeVcfs
CollectJumpingLibraryMetrics NormalizeFasta
CollectMultipleMetrics PositionBasedDownsampleSam
CollectOxoGMetrics QualityScoreDistribution
CollectQualityYieldMetrics RenameSampleInVcf
CollectRawWgsMetrics ReorderSam
CollectRnaSeqMetrics ReplaceSamHeader
CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar
CollectSequencingArtifactMetrics RevertSam
CollectTargetedPcrMetrics SamFormatConverter
CollectVariantCallingMetrics SamToFastq
CollectWgsMetrics ScatterIntervalsByNs
CompareMetrics SortSam
CompareSAMs SortVcf
ConvertSequencingArtifactToOxoG SplitSamByLibrary
CreateSequenceDictionary SplitVcfs
DownsampleSam UpdateVcfSequenceDictionary
EstimateLibraryComplexity ValidateSamFile
ExtractIlluminaBarcodes VcfFormatConverter
ExtractSequences VcfToIntervalList
FastqToSam ViewSam
其他与 picard-tools 有关的软件包
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- dep: default-jre
- Standard Java or Java compatible Runtime
- 或者 java6-runtime
- 本虚包由这些包填实： default-jre, openjdk-21-jre
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- dep: libpicard-java (= 3.3.0+dfsg-2)
- Java library to manipulate SAM and BAM files