eLxr packages [ bianca ]
[ 源代码： samtools ]
软件包：samtools（1.21-1）
processing sequence alignments in SAM, BAM and CRAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.
其他与 samtools 有关的软件包
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libhts3t64 (>= 1.21)
- C library for high-throughput sequencing data formats
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- dep: libncurses6 (>= 6)
- shared libraries for terminal handling
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- dep: libtinfo6 (>= 6)
- shared low-level terminfo library for terminal handling
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: cwltool
- Common Workflow Language reference implementation