eLxr packages [ bianca ]
[ 原始碼： libchado-perl ]
套件：libchado-perl（1.31-6）
database schema and tools for genomic data
Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.
其他與 libchado-perl 有關的套件
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- dep: bioperl
- Perl tools for computational molecular biology
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- dep: libbio-chado-schema-perl
- DBIx::Class layer for the Chado database schema
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- dep: libcgi-session-perl
- persistent session data in CGI applications
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- dep: libclass-dbi-pager-perl
- pager utility for Class::DBI
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- dep: libclass-dbi-perl
- convenient abstraction layer to a database
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- dep: libclass-dbi-pg-perl
- Class::DBI extension for Postgres
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- dep: libdata-stag-perl
- module to manipulate Structured Tags datastructures
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- dep: libdbd-pg-perl
- Perl DBI driver for the PostgreSQL database server
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- dep: libdbi-perl
- Perl Database Interface (DBI)
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- dep: libdbix-dbstag-perl
- module providing relational database to hierarchical mapping
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- dep: libdigest-md5-file-perl
- Perl extension for getting MD5 sums for files and urls
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- dep: libgd-gd2-perl
- 本虛擬套件由這些套件填實： libgd-perl
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- dep: libgo-perl
- perl modules for GO and other OBO ontologies
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- dep: libgraph-perl
- Perl module for graph data structures and algorithms
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- dep: liblog-log4perl-perl
- Perl port of the widely popular log4j logging package
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- dep: libmodule-build-perl
- framework for building and installing Perl modules
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- dep: libsql-translator-perl
- SQL translation library
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- dep: libtemplate-perl
- "Template Toolkit" template processing system in Perl
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- dep: libwww-perl
- simple and consistent interface to the world-wide web
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- dep: libxml-libxslt-perl
- Perl interface to the GNOME libxslt library
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- dep: libxml-perl
- Perl modules for working with XML
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- dep: libxml-simple-perl
- Perl module for reading and writing XML
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- dep: make
- utility for directing compilation
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: postgresql-client
- front-end programs for PostgreSQL (supported version)
同時作為一個虛擬套件由這些套件填實： postgresql-client-17
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- rec: chado-utils
- tools to add/extract data from Chado
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- rec: xsltproc
- XSLT 1.0 command line processor