eLxr packagesПакет: augustus (3.5.0+dfsg-2)
Връзки за augustus
Изтегляне на пакет-източник augustus.
Отговорници:
Външни препратки:
- Начална страница [bioinf.uni-greifswald.de]
Подобни пакети:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Други пакети, свързани с augustus
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- dep: augustus-data
- data files for AUGUSTUS
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- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
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- dep: libcolamd2 (>= 1:4.5.2)
- column approximate minimum degree ordering library for sparse matrices
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- dep: libgcc-s1 (>= 4.5)
- GCC support library
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- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
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- dep: libhts3 (>= 1.10)
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- dep: libmariadb3 (>= 3.0.0)
- MariaDB database client library
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- dep: libmysql++3v5 (>= 3.2.5-1~)
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- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 shared library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- rec: samtools
- Пакетът не е наличен
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- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- sug: diamond-aligner
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- sug: libdbd-mysql-perl
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- sug: libfile-which-perl
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- sug: libparallel-forkmanager-perl
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- sug: libyaml-perl
- YAML Ain't Markup Language
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- sug: python3-biopython
- Пакетът не е наличен
Изтегляне на augustus
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| arm64 | 1 715,1 кБ | 10 617,0 кБ | [списък на файловете] |