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[ Source: samtools ]
Package: samtools (1.21-1)
Links for samtools
Download Source Package samtools:
Maintainers:
External Resources:
- Homepage [www.htslib.org]
Similar packages:
processing sequence alignments in SAM, BAM and CRAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.
Other Packages Related to samtools
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libhts3t64 (>= 1.21)
- C library for high-throughput sequencing data formats
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- dep: libncurses6 (>= 6)
- shared libraries for terminal handling
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- dep: libtinfo6 (>= 6)
- shared low-level terminfo library for terminal handling
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: cwltool
- Common Workflow Language reference implementation
Download samtools
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 651.5 kB | 1,447.0 kB | [list of files] |
| arm64 | 622.5 kB | 1,679.0 kB | [list of files] |