Paket: gmap (2024-11-20+ds-2)

Links für gmap

eLxr Patch-Überblick

Quellcode-Paket gmap herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [research-pub.gene.com]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Andere Pakete mit Bezug zu gmap

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

gmap herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	33.685,8 kB	268.823,0 kB	[Liste der Dateien]