Paquet : gmap (2024-11-20+ds-2)

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spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

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dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.34)

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un paquet virtuel est également fourni par libc6-udeb
dep: perl

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dep: zlib1g (>= 1:1.2.6)

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	33 685,8 ko	268 823,0 ko	[liste des fichiers]