eLxr packages [ bianca ]
[ Quellcode: iqtree ]
Paket: iqtree (2.0.7+dfsg-1 und andere)
Links für iqtree
Quellcode-Paket iqtree herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [www.cibiv.at]
Ähnliche Pakete:
efficient phylogenetic software by maximum likelihood
IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others:
* A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (see Nguyen et al., 2015) * An ultrafast bootstrap approximation to assess branch supports (see Minh et al., 2013). * A wide range of substitution models for binary, DNA, protein, codon, and morphological alignments. * Ultrafast model selection for all data types, 10 to 100 times faster than jModelTest and ProtTest. * Finding best partition scheme like PartitionFinder. * Partitioned models with mixed data types for phylogenomic (multi- gene) alignments, allowing for separate, proportional, or joint branch lengths among genes. * Supporting the phylogenetic likelihod library (PLL) (see Flouri et al., 2014)
Andere Pakete mit Bezug zu iqtree
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 4.0)
- GCC support library
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libopenmpi40 (>= 5.0.6)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
iqtree herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| amd64 | 2.0.7+dfsg-1+b2 | 3.566,8 kB | 25.632,0 kB | [Liste der Dateien] |