Paket: last-align (1609-1 und andere)

Links für last-align

eLxr Patch-Überblick

Quellcode-Paket last-align herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [gitlab.com]

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Andere Pakete mit Bezug zu last-align

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: parallel

build and execute command lines from standard input in parallel
rec: python3-pil

Python Imaging Library (Python3)

last-align herunterladen

Download für alle verfügbaren Architekturen
Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1609-1+b1	1.788,9 kB	15.312,0 kB	[Liste der Dateien]