eLxr packages [ bianca ]
[ Pakiet źródłowy: last-align ]
Pakiet: last-align (1609-1 i inne)
Odnośniki dla last-align
Pobieranie pakietu źródłowego last-align:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [gitlab.com]
Podobne pakiety:
genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:
* Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome.
The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.
Inne pakiety związane z last-align
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: parallel
- build and execute command lines from standard input in parallel
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- rec: python3-pil
- Python Imaging Library (Python3)
Pobieranie last-align
| Architektura | Wersja | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|---|
| amd64 | 1609-1+b1 | 1 788,9 KiB | 15 312,0 KiB | [lista plików] |