Paket: maffilter (1.3.1+dfsg-6 und andere)

Links für maffilter

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Quellcode-Paket maffilter herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [jydu.github.io]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

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erweitert

dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libbpp-core4t64 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl-omics3t64 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12t64 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq-omics3t64 (>= 2.4.1)

Bio++ Sequence library: genomics components
dep: libbpp-seq12t64 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

maffilter herunterladen

Download für alle verfügbaren Architekturen
Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1.3.1+dfsg-6	259,5 kB	1.308,0 kB	[Liste der Dateien]
arm64	1.3.1+dfsg-6+b1	238,6 kB	1.369,0 kB	[Liste der Dateien]