Paquet : maffilter (1.3.1+dfsg-6 et autres)

Liens pour maffilter

Suivis des correctifs pour eLxr

Télécharger le paquet source maffilter :

Responsables :

Ressources externes :

Page d'accueil [jydu.github.io]

Paquets similaires :

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Autres paquets associés à maffilter

dépendances

recommandations

suggestions

enhances

dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libbpp-core4t64 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl-omics3t64 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12t64 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq-omics3t64 (>= 2.4.1)

Bio++ Sequence library: genomics components
dep: libbpp-seq12t64 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

Télécharger maffilter

Télécharger pour toutes les architectures proposées
Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	1.3.1+dfsg-6	259,5 ko	1 308,0 ko	[liste des fichiers]
arm64	1.3.1+dfsg-6+b1	238,6 ko	1 369,0 ko	[liste des fichiers]