Paket: mash (2.3+dfsg-6 und andere)

Links für mash

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Quellcode-Paket mash herunterladen:

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Externe Ressourcen:

Homepage [mash.readthedocs.io]

fast genome and metagenome distance estimation using MinHash

Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.

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dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libcapnp-1.1.0

Cap'n Proto C++ library
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libgsl28 (>= 2.8+dfsg)

GNU Scientific Library (GSL) -- library package
dep: libmurmurhash2 (>= 0.2)

Portable MurmurHash Implementation
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

mash herunterladen

Download für alle verfügbaren Architekturen
Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	2.3+dfsg-6+b2	187,5 kB	538,0 kB	[Liste der Dateien]
arm64	2.3+dfsg-6+b2	165,3 kB	490,0 kB	[Liste der Dateien]